@Kyle, I went ahead and made a post of this for you instead of keeping it in a PM. That way more people can give you input.
Where in Currie's documentation does it say to keep the control arms at the stock length? When I installed my Currie 4" lift, it had specific lengths for the adjustable control arms to be set to, and I found that Currie's measurements were dead on accurate.
So first off, I would make sure you have your new control arms adjusted to the right length.
After that is taken care of (and assuming you did indeed install a double cardan driveshaft and you're NOT using the stock driveshaft), your rear pinion should be sitting 1-2 degrees lower than the angle of your driveshaft. So for instance, if your driveshaft is at 15 degrees, your pinion would be 1-2 degrees lower. This is because when you accelerate, the pinion will rise slightly.
@derekmac did a nice write-up on all of this. I'm looking for it, but for the life of me I can't find it.
EDIT: Here it is:
https://wranglertjforum.com/threads/what-is-a-sye-cv-driveshaft-and-why-do-i-want-one.2701/