No idea which is better or if it matters. Historically, the reason we have thick cut gears as an option is because it allows people to retain their existing carriers, LSDs, and lockers and use them on the "wrong" side of the carrier break. Jeep gave us the Rubicon lockers from the factory with thick cut 4.10 gears because that locker was designed for standard 3.73 and down gears.
FWiW, I am among countless others who regeared those lockers with deeper thick cut gears. The incremental evolution of my build has resulted in both my current ARB lockers having thick cut 538s. If I were to buy two brand new lockers today, they would run standard cut 538 gears. But I can't defend one over the other.