Okay, good news. Just spent the last 45 minutes talking to Paul Coplin of FullStack Motorsports (turns out that he doesn't live that far from me). He's going to order me a set of Fox 2.0 Factory Series Performance Reservoir Shocks and he said with the shocks he will include his TJ specific tune, which also includes a free "re-tune" incase I get them on and don't like them.
Apparently his TJ is running almost the exact same setup as mine, so he was a huge help. I cringe at the price of these shocks, but I really like that they are aluminum, they can be rebuilt when necessary, and they can be tuned specifically to the vehicle. I'd mentioned to him about wanting a nicer ride, and he said yes, he can indeed tune them a bit softer as oppose to more harsh, which is how they ride off-the-shelf.
That completes the parts I need for the mid-arm install. Now let's see how long it takes them to install it. The guy at the shop seemed optimistic it would take around 15 hours (and therefore $1500 in labor), but I remain skeptical that it will be that cheap. I was thinking more like $2000 in labor.
We'll find out!