Novak Conversions Jeep Wrangler TJ engine mounts

How close to the side and rear windows come to contacting the rear roll bar with a Trektop NX?

They touch the rear roll bar at the top on both the sides and in the rear. The sides go down from there and out slightly to attach to the tub. That bar wouldn't cause any issue.
 
Novak Conversions Jeep Wrangler TJ engine mounts